PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G120400.1
Common NamePHAVU_001G120400g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 130aa    MW: 14788.7 Da    PI: 9.3462
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G120400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.2e-074691245
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        g+W+  + + + +a + + ++   +W  +a+ +g g+t++++k ++ 
  Phvul.001G120400.1 46 GSWSVKDNKAFEKALAVYDKDtpdRWYNVAHAVG-GKTPEEVKRHYE 91
                        79********************************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.6594398IPR017884SANT domain
SMARTSM007178.7E-84496IPR001005SANT/Myb domain
PfamPF002496.0E-64691IPR001005SANT/Myb domain
SuperFamilySSF466894.81E-1246102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-547100IPR009057Homeodomain-like
CDDcd001671.35E-45494No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MLFLESDHYK LLTLHNTFAT NSVTISQLHF FSFLKQMASS SISASGSWSV KDNKAFEKAL  60
AVYDKDTPDR WYNVAHAVGG KTPEEVKRHY ELLVQDVKHI ESGRVPFPNY KKTAASDQEE  120
KRLRNLNLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-4037129193RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-130AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162062.14e-93hypothetical protein PHAVU_001G120400g
SwissprotQ58FS31e-40RAD_ANTMA; Transcription factor RADIALIS
TrEMBLV7CYS14e-93V7CYS1_PHAVU; Uncharacterized protein
STRINGGLYMA03G28050.13e-50(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-37RAD-like 1